Matthew J. Neave

Bioinformatics - Data Science


Projects | Publications | Archive | About

2019

Investigating the natural resistance of Haliotis iris (blackfoot pāua) to abalone viral ganglioneuritis using whole transcriptome analysis.

Neave, M.J., Corbeil, S., McColl, K.A., Crane, M.S.J., 2019. Diseases of Aquatic Organisms , In Press.


RNASeq analysis of Aedes albopictus mosquito midguts after chikungunya virus infection.

Vedururu, R., Neave, M.J., Tachedjian, M., Klein, M.J., Gorry, P.R., Duchemin, J-B., Paradkar, P.N., 2019. Viruses 11, 513. PDF


Attenuation of BTV in an in ovo model is related to the changes of viral genetic diversity of cell-culture passaged BTV

Lean, F.Z-X., Neave, M.J., White, J.R., Payne, J., Eastwood, T., Bergfeld, J., di Rubbo, A., Stevens, V., Davies, K., Devlin, J., Williams, D.T., Bingham, J., 2019. Viruses 11 PDF


The microbial community of Red Sea coral reefs

Neave, M.J., Apprill, A., Aeby, G., Miyake, S., Voolstra, C.R., 2019. In, C Voolstra and M Berumen (eds), Coral Reefs of the Red Sea, Springer. doi: 10.1007/978-3-030-05802-9. Link


2018

Robust innate immunity of young rabbits mediates resistance to rabbit hemorrhagic disease caused by Lagovirus europaeus GI.1 but not GI.2.

Neave, M.J., Hall, R.N., Huang, N., McColl, K.A., Kerr, P., Hoehn, M., Taylor, J., Strive, T., 2018. Viruses 10, 512. PDF


Biocontrol of carp: more than just a herpesvirus.

McColl, K.A., Sunarto, A., Neave, M.J., 2018. Frontiers in Microbiology 9, 2288. PDF


2017

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton.

Cárdenas, A., Neave, M.J., Haroon, M., Pogoreutz, C., Rädecker, N., Gärdes, A., Wild, C., Voolstra, C., 2017. The ISME Journal 12, 59-76. PDF


Transcriptomic analysis of common carp anterior kidney during Cyprinid herpesvirus 3 infection: Immunoglobulin repertoire and homologue functional divergence.

Neave, M.J., Sunarto, A., McColl, K.A., 2017. Scientific Reports 7, 41531. PDF


Multiple approaches to assess the safety of artisanal marine food in a tropical estuary.

Padovan, A.C., Neave, M.J., Munksgaard, N.C., Gibb, K.S., 2017. Environmental Monitoring and Assessment 189, 215. PDF


Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales.

Neave, M.J., Rachmawati, R., Xun, L., Michell, C.T., Bourne, D.G., Apprill, A., Voolstra, C.R., 2017. The ISME Journal 11, 186-200. PDF | analysis code | Fig. 1 sampling map code


Prevalent and persistent viral infection in cultures of the coral algal endosymbiont, Symbiodinium

Weynberg, K.D., Neave, M.J., Clode, P.L., Voolstra, C.R., Brownlee, C., Laffy, P.W., Webster, N.S., Levin, R.A., Wood-Charlson, E.M., van Oppen, M.J.H., 2017. Coral Reefs 36, 773-784. PDF


Endozoicomonas genomes reveal functional adaptation and plasticity in strains symbiotically associated with diverse marine hosts.

Neave, M.J., Michell, C.T., Apprill, A., Voolstra, C.R., 2017. Scientific Reports 7, 40579. PDF
*Nature Microbiology 'behind the paper'


2016

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas.

Neave, M.J., Apprill, A., Ferrier-Pagès, C., Voolstra, C.R., 2016. Applied Microbiology and Biotechnology 100, 8315-8324. PDF | Fig. 1 code


2015

From cholera to corals: Viruses as drivers of virulence in a major coral bacterial pathogen.

Weynberg, K.D., Voolstra, C.R., Neave, M.J., Buerger, P., van Oppen, M.J.H., 2015. Scientific Reports 5, 17889. PDF


2014

Whole genome sequences of three symbiotic Endozoicomonas bacteria.

Neave, M.J., Michell, C.T., Apprill, A., Voolstra, C.R., 2014. Genome Announcements 2, e00802-14. PDF


Multiple approaches to microbial source tracking in tropical northern Australia.

Neave, M.J., Luter, H., Padovan, A., Townsend, S., Schobben, X., Gibb, K., 2014. MicrobiologyOpen 6, 860-874. PDF | Fig. 1 code


2013

The diversity and abundance of polychaetes (Annelida) are altered by alumina refinery waste in the Northern Territory, Australia.

Neave, M.J., Glasby, C.J., McGuinness, K.A., Parry, D.L., Streten-Joyce, C., Gibb, K.S., 2013. Marine Environmental Research 92, 253-263. PDF


The microbiome of the Red Sea coral Stylophora pistillata is dominated by tissue-associated Endozoicomonas bacteria.

Bayer, T., Neave, M.J., Hussain, A., Aranda, M., Yum, L. Mincer, T., Hughen, K., Apprill, A., Voolstra, C., 2013. Applied and Environmental Microbiology 79, 4759-4762. PDF


New species of Ophelina (Polychaeta: Opheliidae: Ophelininae) from northern Australia.

Neave, M.J. & Glasby, C.J., 2013. Organisms, Diversity and Evolution 13, 331-347. PDF


2012

The transcriptome and proteome are altered in marine polychaetes (Annelida) exposed to elevated metal levels.

Neave, M.J., Streten-Joyce, C., Nouwens, A.S., Glasby, C.J., McGuinness, K.A., Parry, D.L., Gibb, K.S. 2012. Journal of Proteomics 75, 2721-2735. PDF


The bacterial community associated with the marine polychaete Ophelina sp.1 (Annelida: Opheliidae) is altered by copper and zinc contamination in sediments.

Neave, M.J., Streten-Joyce, C., Glasby, C.J., McGuinness, K.A., Parry, D.L., Gibb, K.S., 2012. Microbial Ecology 63, 639-650. PDF